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16S Metagenomics Report


Sample: 3


Analysis software version: 2.5.1.3

Report Date: 09/08/2017 21:03:16



Sample Information

Sample ID:plate1-C01
Sample Name:3
Run Folder:D:\Illumina\MiSeqAnalysis\170906_M00907_0076_000000000-BB7K4
Taxonomy File:gg_13_5_species_32bp.dat

Sequencing Statistics

Total ReadsReads Passing Quality Filtering% Reads Passing Quality Filtering
13,7668,90864.7 %

Classification Rate Summary

Taxonomic LevelReads Classified to Taxonomic Level% Total Reads Classified to Taxonomic Level
Kingdom8,62296.79 %
Phylum8,60396.58 %
Class8,50295.44 %
Order8,42294.54 %
Family8,41994.51 %
Genus7,59385.24 %
Species6,31470.88 %


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Sunburst Classification Chart

This sunburst chart shows the relative abundance of the classification results within each taxonomic level.
Click on any category to zoom in. Click the center button to zoom out.
Click "Reset Plot" to return to a Kingdom-level view.

Top 20 Classification Results by Taxonomic Level

This bar chart shows the relative abundance of the top 20 classification results within each taxonomic level.
Mouse over any category to see its description and abundance.

Classification Results by Taxonomic Level

Tables show the highest 8 taxonomic classifications at each level.
Pie charts show all classifications above 3.5% abundance.

Top Kingdom Classification Results

ClassificationNumber of Reads% Total Reads
Bacteria8,62296.79 %
Unclassified at Kingdom level2863.21 %
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.5% abundance.

Image

Top Phylum Classification Results

ClassificationNumber of Reads% Total Reads
Proteobacteria8,58996.42 %
Unclassified at Phylum level3053.42 %
Actinobacteria70.08 %
Firmicutes20.02 %
Caldithrix20.02 %
Chrysiogenetes10.01 %
Verrucomicrobia10.01 %
Spirochaetes10.01 %
Total Phylum-level Taxonomic Categories Identified: 8.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.5% abundance.

Image

Top Class Classification Results

ClassificationNumber of Reads% Total Reads
Gammaproteobacteria8,48095.20 %
Unclassified at Class level4064.56 %
Actinobacteria60.07 %
Betaproteobacteria40.04 %
Deltaproteobacteria30.03 %
Epsilonproteobacteria20.02 %
Caldithrixae20.02 %
Opitutae10.01 %
Total Class-level Taxonomic Categories Identified: 12. This table shows the top 8 of 12 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.5% abundance.

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Top Order Classification Results

ClassificationNumber of Reads% Total Reads
Enterobacteriales8,34093.62 %
Unclassified at Order level4865.46 %
Pasteurellales220.25 %
Vibrionales120.13 %
Pseudomonadales100.11 %
Alteromonadales90.10 %
Xanthomonadales70.08 %
Actinomycetales60.07 %
Total Order-level Taxonomic Categories Identified: 19. This table shows the top 8 of 19 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.5% abundance.

Image

Top Family Classification Results

ClassificationNumber of Reads% Total Reads
Enterobacteriaceae8,34093.62 %
Unclassified at Family level4895.49 %
Pasteurellaceae220.25 %
Vibrionaceae120.13 %
Moraxellaceae100.11 %
Xanthomonadaceae70.08 %
Ferrimonadaceae40.04 %
Streptosporangiaceae30.03 %
Total Family-level Taxonomic Categories Identified: 24. This table shows the top 8 of 24 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.5% abundance.

Image

Top Genus Classification Results

ClassificationNumber of Reads% Total Reads
Escherichia6,27970.49 %
Unclassified at Genus level1,31514.76 %
Serratia6727.54 %
Enterobacter2642.96 %
Klebsiella1741.95 %
Trabulsiella680.76 %
Sodalis210.24 %
Edwardsiella190.21 %
Total Genus-level Taxonomic Categories Identified: 42. This table shows the top 8 of 42 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.5% abundance.

Image

Top Species Classification Results

ClassificationNumber of Reads% Total Reads
Escherichia albertii5,03656.53 %
Unclassified at Species level2,59429.12 %
Serratia entomophila6637.44 %
Escherichia coli1421.59 %
Klebsiella variicola1261.41 %
Enterobacter hormaechei951.07 %
Enterobacter amnigenus870.98 %
Enterobacter nickellidurans480.54 %
Total Species-level Taxonomic Categories Identified: 48. This table shows the top 8 of 48 classifications.
Note: The "Other" category in this pie chart is the sum of all classifications with less than 3.5% abundance.

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